Gene Prioritization

Gene prioritization portal

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A portal specialized in the presentation of gene prioritization software by the team created Endeavour.

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Endeavour

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"Endeavour Computational Candidate Gene Prioritization by Genomic Data Fusion" is a Software application for the computational prioritization of a list of “test genes”, based on a set of “training genes”.

 

Last Updated on Monday, 14 February 2011 20:37 Read more...

Prioritizer WGA

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Whole Genome Association Prioritizer (WGA). This new software tool and method combines both basic (statistical) functionality for performing preprocessing, quality control and single marker association analysis on raw genotype files from Illumina and Affymetrix WGA chips, but also includes a comprehensive genome viewer, for the joint exploration of the called genotypes and raw data, linkage disequilibrium patterns and genes underlying strong hits. Additionally it includes new functionality to help improve the reliability of detecting real disease SNPs by utilizing our functional human gene network.

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Reproducibility Probability Score

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The Reproducibility Probability Score (RPS) for a gene is defined as the probability that this gene is selected as being differentially expressed from the data  generated by a typical laboratory. A typical laboratory is either the original laboratory that generated the microarray data or a hypothetical laboratory that prudently follows the same protocol to study the same biological materials as the  original laboratory.

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